
The chicken, or Gallus domesticus, has 78 chromosomes in its somatic cells, also known as body cells. These are diploid cells, meaning they contain two sets of chromosomes, one from each parent. In contrast, the chicken's sex cells, or gametes, contain half the number of chromosomes, or 39, making them haploid. The chicken karyotype consists of 39 pairs of chromosomes, with 12 chromosomes or 6 pairs classified as microchromosomes and the remaining 66, or 33 pairs, classified as macrochromosomes. Microchromosomes are characteristically small and gene-rich, containing between 50 and 75% of all genes in chickens.
| Characteristics | Values |
|---|---|
| Number of chromosomes in a chicken cell | 78 |
| Number of chromosomes in chicken sex cells | 39 |
| Number of chromosomes in chicken gametes | 39 |
| Number of chromosomes in chicken offspring cells | 78 |
| Number of microchromosomes in chicken cells | 33 |
| Number of macrochromosomes in chicken cells | 6 |
| Number of pairs of chromosomes in chicken cells | 39 |
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What You'll Learn

Chicken body cells contain 78 chromosomes
The chicken, or Gallus domesticus, has been the focus of a genome mapping project. Its chromosomes are conventionally classified as MACs, MICs, and sexual chromosomes (ZW). MICs in chickens have been estimated to contain between 50 and 75% of all genes. They are characteristically very small and often cytogenetically indistinguishable in a karyotype. The small size and poor condensation of MICs into heterochromatin mean they generally lack the diagnostic banding patterns and distinct centromere locations used for chromosome identification.
The chicken's 39 pairs of chromosomes are produced through a process called meiosis, which reduces the chromosome number by half. Each sex cell in chickens will contain only one set of chromosomes, which is considered haploid. This reduction in chromosome number is crucial because, during reproduction, a male and female gamete combine to form a new organism with the complete set of chromosomes (78 in total for chickens).
The karyotype of birds (except Falconidae) usually has approximately 80 chromosomes, with only a few being distinguishable MACs and an average of 60 being MICs. They are more abundant in birds than in any other group of animals. Comparative genomic analysis shows that MICs contain genetic information that has been conserved across multiple classes of chromosomes.
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Chicken sex cells contain 39 chromosomes
The chicken karyotype consists of 39 chromosomes in its sex cells, also known as gametes. This is because sex cells are haploid, meaning they contain half the number of chromosomes of the somatic (body) cells, which in the case of chickens, have 78 chromosomes. This division of chromosome number is essential for sexual reproduction, as it allows for the proper genetic mixing between parents during reproduction. During reproduction, one gamete (sex cell) from each parent combines to form a new, unique organism.
The chicken karyotype consists of 33 microchromosomes (MICs), which contain about one-third of genomic DNA. The remaining 66 chromosomes are classified as macrochromosomes (MACs). Microchromosomes are characteristically very small and often cytogenetically indistinguishable in a karyotype, making ordering and identifying chromosomes into a coherent karyotype challenging. While they were originally thought to be insignificant fragments of chromosomes, microchromosomes have been found to be rich in genes and high in GC content in species where they have been studied. In chickens, microchromosomes have been estimated to contain between 50 and 75% of all genes.
The replication timing of chicken chromosomes has been assessed by labeling unsynchronized DT40 cells with bromodeoxyuridine (BrdU) for between 1 and 10 hours before arresting with colcemid. Little or no BrdU incorporation into MICs was noted during the last 4 hours of the S phase, although parts of the MACs were strongly banded by replication during this period. Microchromosomes replicate earlier in the S phase of interphase than macrochromosomes, and recombination rates have also been found to be higher on microchromosomes.
Chicken (Gallus gallus) is an important model organism for studying microchromosomes. Examination of microchromosomes in birds has led to the hypothesis that they may have originated as conserved fragments of ancestral macrochromosomes, and that macrochromosomes could have arisen as aggregates of microchromosomes. Comparative genomic analysis shows that microchromosomes contain genetic information that has been conserved across multiple classes of chromosomes.
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Chicken microchromosomes are gene-rich
Chickens have a diploid number of 78 chromosomes (2n = 78), with 33 pairs of microchromosomes and 6 pairs of macrochromosomes. The chicken karyotype consists of 39 chromosomes, 33 of which are classed as microchromosomes (MICs). These microchromosomes contain about one-third of the genomic DNA and are estimated to contain between 50 and 75% of all genes.
Initially, microchromosomes were thought to be genetically inert. However, it is now understood that they are bona fide chromosomes that are maintained at a constant number and have conserved telomere sequences. They are also found to be rich in genes and high in GC content. CpG islands (CGIs), which are associated with most vertebrate genes, map predominantly to MICs. Acetylated (lysine 5) histone H4, an indicator of the presence of genes, is highly enriched on MICs. Detailed analysis of chicken cosmids reveals that CGI-like fragments are approximately six times denser on MICs than on MACs.
The replication timing and recombination rates differ between micro- and macrochromosomes in chickens. Microchromosomes replicate earlier in the S phase of interphase than macrochromosomes and have higher recombination rates. This has led to the hypothesis that microchromosomes may have originated as conserved fragments of ancestral macrochromosomes. Conversely, it has also been suggested that macrochromosomes could have arisen as aggregates of microchromosomes.
The high gene density and early replication timing of microchromosomes indicate that they are gene-rich. The concentration of CpG islands and acetylated (lysine 5) histone H4 on microchromosomes further support the notion that they play a significant role in gene expression and regulation in chickens.
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Chicken macrochromosomes are larger than the smallest human chromosomes
Chickens have a total of 78 chromosomes in their body cells, also known as somatic cells. These are further classified as macrochromosomes (MACs) and microchromosomes (MICs). The chicken karyotype consists of 39 chromosomes, 33 of which are microchromosomes. These microchromosomes contain about one-third of the genomic DNA and are rich in genes. The remaining 6 chromosomes or 3 pairs are macrochromosomes.
Microchromosomes are characteristically very small and often indistinguishable in a karyotype, making chromosome identification challenging. They are found in many vertebrates but are absent in most mammals. In chickens, microchromosomes are estimated to contain between 50 and 75% of all genes. They have been found to have a much higher gene density than macrochromosomes.
The study of chicken chromosomes, particularly microchromosomes, is important for understanding chromosome organization and evolution in the avian clade. While microchromosomes were once thought to be insignificant, they are now known to be bona fide chromosomes that play a crucial role in genetic diversity.
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Chicken karyotypes are challenging for cytogenetic study
The chicken karyotype is considered challenging for cytogenetic study. The chicken genome is conventionally classified into three types of chromosomes: macrochromosomes (MACs), microchromosomes (MICs), and sexual chromosomes (ZW). The chicken karyotype consists of 78 chromosomes, of which 12 are microchromosomes, and the remaining 66 are macrochromosomes.
One of the main challenges in studying chicken karyotypes is the difficulty in fully classifying and characterizing chicken chromosomes, especially MICs. MICs are considered extremely challenging to analyze due to their small size and unique characteristics. They are known to be gene-rich and contain about one-third of the genomic DNA. While MACs show faint C banding caused by heterochromatin in centromeric and telomeric regions, MICs exhibit strong acetylation associated with the presence of genes.
The unique structure and organization of chicken chromosomes, including the presence of a large number of MICs, have hindered the understanding of genome organization in avians. This has created a barrier to the progress of genome mapping and evolution studies. Additionally, the chicken genome has undergone significant evolutionary changes, and its relationship to other species, such as dinosaurs, is still being elucidated.
Furthermore, the process of identifying and discriminating each MIC chromosome and distinguishing between MICs and MACs has been challenging. Image cytometry has been employed as a quantitative measure of chromosome DNA amount to address these challenges. However, the chicken karyotype remains one of the most complex and challenging for cytogenetic research, providing a framework for understanding genome-phenome correlations.
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Frequently asked questions
There are 78 chromosomes in a chicken's body cells, also known as somatic cells.
A chicken's sex cells, or gametes, contain half the number of chromosomes found in its body cells, so 39.
Microchromosomes are characteristically very small and often hard to distinguish in a karyotype. They are found in many vertebrates, but not in most mammals. In chickens, they are estimated to contain between 50 and 75% of all genes.
The karyotype of a chicken, or Gallus domesticus, consists of 2n=78 chromosomes. However, the classification of chicken chromosomes varies by author. Some classify them as 6 pairs of macrochromosomes, one pair of sex chromosomes, and 32 pairs of microchromosomes.
































